E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes

• Authors: ŠAFRÁNEK David; ČERVENÝ Jan; KLEMENT Matej; POSPÍŠILOVÁ Jana; BRIM Luboš; LAZÁR Dušan; NEDBAL Ladislav
• Year of publication: 2011
• Type: Article in Periodical
• Magazine / Source: BioSystems
• MU Faculty or unit: Faculty of Informatics
• Web: http://www.sciencedirect.com/science/article/pii/S030326471000198X
• Doi: http://dx.doi.org/10.1016/j.biosystems.2010.10.013
• Field: Informatics
• Keywords: Biomodels repository; Computational models; Photosynthesis; Systems biology; Web platform
• Description: E-photosynthesis framework is a web-based platform for modeling and analysis of photosynthetic processes. Compared to its earlier version, the present platform employs advanced software methods and technologies to support an effective implementation of vastly diverse kinetic models of photosynthesis. We report on the first phase implementation of the tool new version and demonstrate the functionalities of model visualization, presentation of model components, rate constants, initial conditions and of model annotation. The demonstration also includes export of a model to the Systems Biology Markup Language format and remote numerical simulation of the model.

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